Index

A

absolute_url (pathling.datasink.FileInformation attribute) alias() (pathling.core.Expression method) (pathling.Expression method) APPEND (pathling.datasink.SaveMode attribute) apply() (pathling.core.Function method) (pathling.core.StringMapper method) (pathling.core.StringToStringSetMapper method)

argv0 (pathling.cli.run.CodeSource attribute) as_expression() (pathling.core.Expression class method) (pathling.Expression class method) as_expression_sequence() (pathling.core.Expression class method) (pathling.Expression class method) as_tuple() (pathling.core.Expression method) (pathling.Expression method)

B

BOOLEAN (pathling.PropertyType attribute) (pathling.udfs.PropertyType attribute) build_banner() (in module pathling.cli.console) bulk() (pathling.datasource.DataSources method) (pathling.DataSources method)

bulk_auth_table (pathling.cli.config.CliConfig attribute) BulkAuth (class in pathling.cli.config) BulkExportClient (class in pathling.bulk) BUNDLES (pathling.cli.io.SourceFormat attribute) bundles() (pathling.datasource.DataSources method) (pathling.DataSources method)

C

check_overwrite() (in module pathling.cli.render) CliConfig (class in pathling.cli.config) CliContext (class in pathling.cli.main) client_id (pathling.cli.config.BulkAuth attribute) (pathling.cli.config.TxAuth attribute) client_secret (pathling.cli.config.BulkAuth attribute) (pathling.cli.config.TxAuth attribute) CliError CODE (pathling.PropertyType attribute) (pathling.udfs.PropertyType attribute) CodeSource (class in pathling.cli.run)

Coding (class in pathling) (class in pathling.coding) CODING (pathling.PropertyType attribute) (pathling.udfs.PropertyType attribute) config (pathling.cli.main.CliContext attribute) config_path (pathling.cli.config.CliConfig attribute) console (pathling.cli.main.CliContext attribute) create() (pathling.context.PathlingContext class method) (pathling.PathlingContext class method) create_context() (in module pathling.cli.session) CSV (pathling.cli.render.OutputFormat attribute)

D

datasets() (pathling.datasource.DataSources method) (pathling.DataSources method) DataSinks (class in pathling.datasink) DataSource (class in pathling) (class in pathling.datasource) DataSources (class in pathling) (class in pathling.datasource) DATETIME (pathling.PropertyType attribute) (pathling.udfs.PropertyType attribute) DECIMAL (pathling.PropertyType attribute) (pathling.udfs.PropertyType attribute) default_config_path() (in module pathling.cli.config) delete() (pathling.spark.Dfs method) DELTA (pathling.cli.io.SourceFormat attribute) (pathling.cli.render.OutputFormat attribute)

delta() (pathling.datasink.DataSinks method) (pathling.datasource.DataSources method) (pathling.DataSources method) departition (pathling.cli.render.OutputSpec attribute) departition() (in module pathling.cli.departition) designation() (in module pathling) (in module pathling.udfs) destination (pathling.bulk.FileResult attribute) detect_format() (in module pathling.cli.io) Dfs (class in pathling.spark) discover_bundle_resource_types() (in module pathling.cli.io) DISJOINT (pathling.Equivalence attribute) (pathling.udfs.Equivalence attribute) DISK (pathling.StorageType attribute) display() (in module pathling) (in module pathling.udfs)

E

enabled (pathling.cli.config.TxAuth property) encode() (pathling.context.PathlingContext method) (pathling.PathlingContext method) encode_bundle() (pathling.context.PathlingContext method) (pathling.PathlingContext method) EQUAL (pathling.Equivalence attribute) (pathling.udfs.Equivalence attribute) Equivalence (class in pathling) (class in pathling.udfs) EQUIVALENT (pathling.Equivalence attribute) (pathling.udfs.Equivalence attribute)

ERROR (pathling.datasink.SaveMode attribute) evaluate_fhirpath() (pathling.context.PathlingContext method) (pathling.PathlingContext method) exists() (pathling.spark.Dfs method) export() (pathling.bulk.BulkExportClient method) ExportResult (class in pathling.bulk) Expression (class in pathling) (class in pathling.core) expression (pathling.core.Expression property) (pathling.Expression property)

F

FHIR_JSON (pathling.fhir.MimeType attribute) (pathling.MimeType attribute) fhir_resource_type (pathling.datasink.FileInformation attribute) fhir_version (pathling.cli.config.CliConfig attribute) FHIR_XML (pathling.fhir.MimeType attribute) (pathling.MimeType attribute) fhirpath_to_column() (pathling.context.PathlingContext method) (pathling.PathlingContext method) file_attr (pathling.cli.run.CodeSource attribute) file_infos (pathling.datasink.WriteDetails attribute) FileInformation (class in pathling.datasink)

filename (pathling.cli.run.CodeSource attribute) FileResult (class in pathling.bulk) for_group() (pathling.bulk.BulkExportClient class method) for_patient() (pathling.bulk.BulkExportClient class method) for_system() (pathling.bulk.BulkExportClient class method) format (pathling.cli.io.SourceSpec attribute) (pathling.cli.render.OutputSpec attribute) friendly_message() (in module pathling.cli.errors) from_java() (pathling.bulk.ExportResult class method) Function (class in pathling.core) Function.Java (class in pathling.core)

G

get_temp_dir_path() (pathling.spark.Dfs method)

I

IGNORE (pathling.datasink.SaveMode attribute) implements (pathling.core.Function.Java attribute) (pathling.core.StringMapper.Java attribute) (pathling.core.StringToStringSetMapper.Java attribute) INEXACT (pathling.Equivalence attribute) (pathling.udfs.Equivalence attribute)

infer_format_from_extension() (in module pathling.cli.render) INTEGER (pathling.PropertyType attribute) (pathling.udfs.PropertyType attribute) invoke() (pathling.cli.main.PathlingCli method) is_auth_error() (in module pathling.cli.errors) is_connection_error() (in module pathling.cli.errors)

L

label (pathling.core.Expression property) (pathling.Expression property)

limit (pathling.cli.render.OutputSpec attribute) load_config_file() (in module pathling.cli.config)

M

mechanism (pathling.cli.config.BulkAuth property) member_of() (in module pathling) (in module pathling.udfs) MEMORY (pathling.StorageType attribute) MERGE (pathling.datasink.SaveMode attribute) merge_spark_conf() (in module pathling.cli.sparkconf) MimeType (class in pathling) (class in pathling.fhir) mkdirs() (pathling.spark.Dfs method) module pathling pathling.bulk pathling.cli pathling.cli.config pathling.cli.console pathling.cli.convert pathling.cli.departition pathling.cli.errors pathling.cli.export pathling.cli.fhirpath pathling.cli.io pathling.cli.main pathling.cli.render pathling.cli.run pathling.cli.session pathling.cli.sparkconf pathling.cli.terminology pathling.cli.view pathling.coding pathling.context pathling.core pathling.datasink pathling.datasource pathling.fhir pathling.functions pathling.spark pathling.udfs

N

NARROWER (pathling.Equivalence attribute) (pathling.udfs.Equivalence attribute) NDJSON (pathling.cli.io.SourceFormat attribute) (pathling.cli.render.OutputFormat attribute) ndjson() (pathling.datasink.DataSinks method) (pathling.datasource.DataSources method) (pathling.DataSources method)

NDJSON_EXTENSION (pathling.datasource.DataSources attribute) (pathling.DataSources attribute) NDJSON_MIMETYPE (pathling.datasource.DataSources attribute) (pathling.DataSources attribute)

O

of_snomed() (pathling.Coding class method) (pathling.coding.Coding class method) output_options() (in module pathling.cli.render)

OutputFormat (class in pathling.cli.render) OutputSpec (class in pathling.cli.render) overwrite (pathling.cli.render.OutputSpec attribute) OVERWRITE (pathling.datasink.SaveMode attribute)

P

PARQUET (pathling.cli.io.SourceFormat attribute) (pathling.cli.render.OutputFormat attribute) parquet() (pathling.datasink.DataSinks method) (pathling.datasource.DataSources method) (pathling.DataSources method) parse_args() (pathling.cli.run.RunCommand method) parse_spark_conf_flags() (in module pathling.cli.sparkconf) path (pathling.cli.io.SourceSpec attribute) (pathling.cli.render.OutputSpec attribute) path_entry (pathling.cli.run.CodeSource attribute) pathling module pathling.bulk module pathling.cli module pathling.cli.config module pathling.cli.console module pathling.cli.convert module pathling.cli.departition module pathling.cli.errors module pathling.cli.export module pathling.cli.fhirpath module pathling.cli.io module pathling.cli.main module pathling.cli.render module

pathling.cli.run module pathling.cli.session module pathling.cli.sparkconf module pathling.cli.terminology module pathling.cli.view module pathling.coding module pathling.context module pathling.core module pathling.datasink module pathling.datasource module pathling.fhir module pathling.functions module pathling.spark module pathling.udfs module PathlingCli (class in pathling.cli.main) PathlingContext (class in pathling) (class in pathling.context) private_key_jwk (pathling.cli.config.BulkAuth attribute) progress_status() (in module pathling.cli.render) property_of() (in module pathling) (in module pathling.udfs) PropertyType (class in pathling) (class in pathling.udfs)

Q

quiet_log4j2_path() (in module pathling.cli.session)

R

R4 (pathling.fhir.Version attribute) (pathling.Version attribute) read (pathling.context.PathlingContext property) (pathling.PathlingContext property) read() (pathling.DataSource method) (pathling.datasource.DataSource method) read_single_resource() (in module pathling.cli.io) read_source() (in module pathling.cli.io) RELATEDTO (pathling.Equivalence attribute) (pathling.udfs.Equivalence attribute) remove_path() (in module pathling.cli.departition) render_csv() (in module pathling.cli.render) render_ndjson() (in module pathling.cli.render)

render_rows() (in module pathling.cli.render) render_table() (in module pathling.cli.render) resolve_bulk_auth() (in module pathling.cli.config) resolve_config() (in module pathling.cli.config) resolve_config_source() (in module pathling.cli.config) resolve_output() (in module pathling.cli.render) resolve_secret() (in module pathling.cli.config) resolve_source() (in module pathling.cli.io) resolve_spark_conf() (in module pathling.cli.sparkconf) RESOURCE (pathling.cli.io.SourceFormat attribute) resource_types() (pathling.DataSource method) (pathling.datasource.DataSource method) results (pathling.bulk.ExportResult attribute) RunCommand (class in pathling.cli.run)

S

SaveMode (class in pathling.datasink) scope (pathling.cli.config.BulkAuth attribute) (pathling.cli.config.TxAuth attribute) search_to_column() (pathling.context.PathlingContext method) (pathling.PathlingContext method) size (pathling.bulk.FileResult attribute) source (pathling.bulk.FileResult attribute) SourceFormat (class in pathling.cli.io) SourceSpec (class in pathling.cli.io) spark (pathling.context.PathlingContext property) (pathling.core.SparkConversionsMixin property) (pathling.PathlingContext property) spark_conf (pathling.cli.config.CliConfig attribute) SparkConversionsMixin (class in pathling.core) SPECIALIZES (pathling.Equivalence attribute) (pathling.udfs.Equivalence attribute)

stderr_console() (in module pathling.cli.render) StorageType (class in pathling) STRING (pathling.PropertyType attribute) (pathling.udfs.PropertyType attribute) StringMapper (class in pathling.core) StringMapper.Java (class in pathling.core) StringToStringSetMapper (class in pathling.core) StringToStringSetMapper.Java (class in pathling.core) subsumed_by() (in module pathling) (in module pathling.udfs) SUBSUMES (pathling.Equivalence attribute) (pathling.udfs.Equivalence attribute) subsumes() (in module pathling) (in module pathling.udfs)

T

TABLE (pathling.cli.render.OutputFormat attribute) tables() (pathling.datasink.DataSinks method) (pathling.datasource.DataSources method) (pathling.DataSources method) text (pathling.cli.run.CodeSource attribute) to_coding() (in module pathling) (in module pathling.functions) to_ecl_value_set() (in module pathling) (in module pathling.functions) to_literal() (pathling.Coding method) (pathling.coding.Coding method)

to_loinc_coding() (in module pathling.functions) to_snomed_coding() (in module pathling) (in module pathling.functions) token_endpoint (pathling.cli.config.BulkAuth attribute) (pathling.cli.config.TxAuth attribute) transaction_time (pathling.bulk.ExportResult attribute) translate() (in module pathling) (in module pathling.udfs) tx_auth (pathling.cli.config.CliConfig attribute) tx_server (pathling.cli.config.CliConfig attribute) TxAuth (class in pathling.cli.config)

U

UNMATCHED (pathling.Equivalence attribute) (pathling.udfs.Equivalence attribute)

unwrap_java_exception() (in module pathling.cli.errors)

V

validate_and_coerce() (in module pathling.cli.sparkconf) VariableExpression (class in pathling) (class in pathling.core) verbose (pathling.cli.config.CliConfig attribute) Version (class in pathling) (class in pathling.fhir)

version() (pathling.context.PathlingContext method) (pathling.PathlingContext method) view() (pathling.DataSource method) (pathling.datasource.DataSource method)

W

when_many (pathling.core.VariableExpression property) (pathling.VariableExpression property) WIDER (pathling.Equivalence attribute) (pathling.udfs.Equivalence attribute)

write (pathling.DataSource property) (pathling.datasource.DataSource property) write_output() (in module pathling.cli.render) WriteDetails (class in pathling.datasink)