Welcome to pathling’s documentation!

Contents:

• pathling package
  • Subpackages
    • pathling.cli package
      • Submodules
      • pathling.cli.config module
      • pathling.cli.console module
      • pathling.cli.convert module
      • pathling.cli.departition module
      • pathling.cli.errors module
      • pathling.cli.export module
      • pathling.cli.fhirpath module
      • pathling.cli.import_terminology module
      • pathling.cli.io module
      • pathling.cli.main module
      • pathling.cli.render module
      • pathling.cli.run module
      • pathling.cli.session module
      • pathling.cli.sparkconf module
      • pathling.cli.terminology module
      • pathling.cli.view module
      • Module contents
  • Submodules
  • pathling.bulk module
    • BulkExportClient
      • BulkExportClient.export()
      • BulkExportClient.for_group()
      • BulkExportClient.for_patient()
      • BulkExportClient.for_system()
    • ExportResult
      • ExportResult.from_java()
      • ExportResult.results
      • ExportResult.transaction_time
    • FileResult
      • FileResult.destination
      • FileResult.size
      • FileResult.source
  • pathling.coding module
    • Coding
      • Coding.of_snomed()
      • Coding.to_literal()
  • pathling.context module
    • PathlingContext
      • PathlingContext.create()
      • PathlingContext.encode()
      • PathlingContext.encode_bundle()
      • PathlingContext.evaluate_fhirpath()
      • PathlingContext.fhirpath_to_column()
      • PathlingContext.import_fhir_terminology()
      • PathlingContext.import_snomed()
      • PathlingContext.read
      • PathlingContext.search_to_column()
      • PathlingContext.spark
      • PathlingContext.version()
  • pathling.core module
    • Expression
      • Expression.alias()
      • Expression.as_expression()
      • Expression.as_expression_sequence()
      • Expression.as_tuple()
      • Expression.expression
      • Expression.label
    • Function
      • Function.Java
      • Function.apply()
    • SparkConversionsMixin
      • SparkConversionsMixin.spark
    • StringMapper
      • StringMapper.Java
      • StringMapper.apply()
    • StringToStringSetMapper
      • StringToStringSetMapper.Java
      • StringToStringSetMapper.apply()
    • VariableExpression
      • VariableExpression.when_many
  • pathling.datasink module
    • DataSinks
      • DataSinks.delta()
      • DataSinks.ndjson()
      • DataSinks.parquet()
      • DataSinks.tables()
    • FileInformation
      • FileInformation.absolute_url
      • FileInformation.fhir_resource_type
    • SaveMode
      • SaveMode.APPEND
      • SaveMode.ERROR
      • SaveMode.IGNORE
      • SaveMode.MERGE
      • SaveMode.OVERWRITE
    • WriteDetails
      • WriteDetails.file_infos
  • pathling.datasource module
    • DataSource
      • DataSource.read()
      • DataSource.resource_types()
      • DataSource.view()
      • DataSource.write
    • DataSources
      • DataSources.NDJSON_EXTENSION
      • DataSources.NDJSON_MIMETYPE
      • DataSources.bulk()
      • DataSources.bundles()
      • DataSources.datasets()
      • DataSources.delta()
      • DataSources.ndjson()
      • DataSources.parquet()
      • DataSources.tables()
  • pathling.fhir module
    • MimeType
      • MimeType.FHIR_JSON
      • MimeType.FHIR_XML
    • Version
      • Version.R4
  • pathling.functions module
    • to_coding()
    • to_ecl_value_set()
    • to_loinc_coding()
    • to_snomed_coding()
  • pathling.spark module
    • Dfs
      • Dfs.delete()
      • Dfs.exists()
      • Dfs.get_temp_dir_path()
      • Dfs.mkdirs()
  • pathling.udfs module
    • Equivalence
      • Equivalence.DISJOINT
      • Equivalence.EQUAL
      • Equivalence.EQUIVALENT
      • Equivalence.INEXACT
      • Equivalence.NARROWER
      • Equivalence.RELATEDTO
      • Equivalence.SPECIALIZES
      • Equivalence.SUBSUMES
      • Equivalence.UNMATCHED
      • Equivalence.WIDER
    • PropertyType
      • PropertyType.BOOLEAN
      • PropertyType.CODE
      • PropertyType.CODING
      • PropertyType.DATETIME
      • PropertyType.DECIMAL
      • PropertyType.INTEGER
      • PropertyType.STRING
    • designation()
    • display()
    • member_of()
    • property_of()
    • subsumed_by()
    • subsumes()
    • translate()
  • Module contents
    • Coding
      • Coding.of_snomed()
      • Coding.to_literal()
    • DataSource
      • DataSource.read()
      • DataSource.resource_types()
      • DataSource.view()
      • DataSource.write
    • DataSources
      • DataSources.NDJSON_EXTENSION
      • DataSources.NDJSON_MIMETYPE
      • DataSources.bulk()
      • DataSources.bundles()
      • DataSources.datasets()
      • DataSources.delta()
      • DataSources.ndjson()
      • DataSources.parquet()
      • DataSources.tables()
    • Equivalence
      • Equivalence.DISJOINT
      • Equivalence.EQUAL
      • Equivalence.EQUIVALENT
      • Equivalence.INEXACT
      • Equivalence.NARROWER
      • Equivalence.RELATEDTO
      • Equivalence.SPECIALIZES
      • Equivalence.SUBSUMES
      • Equivalence.UNMATCHED
      • Equivalence.WIDER
    • Expression
      • Expression.alias()
      • Expression.as_expression()
      • Expression.as_expression_sequence()
      • Expression.as_tuple()
      • Expression.expression
      • Expression.label
    • MimeType
      • MimeType.FHIR_JSON
      • MimeType.FHIR_XML
    • PathlingContext
      • PathlingContext.create()
      • PathlingContext.encode()
      • PathlingContext.encode_bundle()
      • PathlingContext.evaluate_fhirpath()
      • PathlingContext.fhirpath_to_column()
      • PathlingContext.import_fhir_terminology()
      • PathlingContext.import_snomed()
      • PathlingContext.read
      • PathlingContext.search_to_column()
      • PathlingContext.spark
      • PathlingContext.version()
    • PropertyType
      • PropertyType.BOOLEAN
      • PropertyType.CODE
      • PropertyType.CODING
      • PropertyType.DATETIME
      • PropertyType.DECIMAL
      • PropertyType.INTEGER
      • PropertyType.STRING
    • StorageType
      • StorageType.DISK
      • StorageType.MEMORY
    • VariableExpression
      • VariableExpression.when_many
    • Version
      • Version.R4
    • designation()
    • display()
    • member_of()
    • property_of()
    • subsumed_by()
    • subsumes()
    • to_coding()
    • to_ecl_value_set()
    • to_loinc_coding()
    • to_snomed_coding()
    • translate()

Indices and tables

• Index

• Module Index

• Search Page