All functions

Equivalence

Concept map equivalence types

ImportMode

ImportMode

LOINC_URI

LOINC system URI

MimeType

FHIR MIME types

PropertyType

Coding property data types

SNOMED_URI

SNOMED CT system URI

SaveMode

SaveMode

StorageType

Terminology cache storage type

Version

FHIR versions

conditions

Synthetic conditions data

ds_aggregate()

Execute an aggregate query

ds_extract()

Execute an extract query

ds_read()

Get data for a resource type from a data source

ds_write_delta()

Write FHIR data to Delta files

ds_write_ndjson()

Write FHIR data to NDJSON files

ds_write_parquet()

Write FHIR data to Parquet files

ds_write_tables()

Write FHIR data to managed tables

pathling_connect()

Create or retrieve the Pathling context

pathling_disconnect()

Disconnect from the Spark session

pathling_disconnect_all()

Disconnect all Spark connections

pathling_encode()

Encode FHIR JSON or XML to a dataframe

pathling_encode_bundle()

Encode FHIR Bundles to a dataframe

pathling_example_resource()

Read resource from Pathling example data

pathling_examples()

Get path to Pathling example data

pathling_install_spark()

Install Spark

pathling_is_spark_installed()

Check if Spark is installed

pathling_read_bundles()

Create a data source from FHIR bundles

pathling_read_datasets()

Create a data source from datasets

pathling_read_delta()

Create a data source from Delta tables

pathling_read_ndjson()

Create a data source from NDJSON

pathling_read_parquet()

Create a data source from Parquet tables

pathling_read_tables()

Create a data source from managed tables

pathling_spark()

Get the Spark session

pathling_spark_info()

Get versions of Spark and other dependencies

pathling_version()

Get version of Pathling

to_array()

Convert a vector to a SQL array literal

tx_designation()

Get designations for codings

tx_display()

Get the display text for codings

tx_member_of()

Test membership within a value set

tx_property_of()

Get properties for codings

tx_subsumed_by()

Test subsumption between codings

tx_subsumes()

Test subsumption between codings

tx_to_coding()

Convert codes to Coding structures

tx_to_ecl_value_set()

Convert a SNOMED CT ECL expression to a ValueSet URI

tx_to_loinc_coding()

Convert LOINC codes to Coding structures

tx_to_snomed_coding()

Convert SNOMED CT codes to Coding structures

tx_translate()

Translate between value sets