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Libraries

Pathling provides a set of libraries that provide assistance with using FHIR and terminology services from Apache Spark applications and data science workflows. The libraries are available for Python, Scala and Java.

We also have upcoming support for R, subscribe to this issue for updates.

Installation

Python

To use the Pathling encoders from Python, install the pathling package using pip. Note that Java 11 or later is required, with yourJAVA_HOME properly set.

Scala

To use the Pathling encoders from Scala, install the au.csiro.pathling:encoders Maven package.

Java

To use the Pathling encoders from Java, install the au.csiro.pathling:encoders Maven package.